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Candy, A. S., Taylor Parkins, S. K., Van Duyl, F. C., Mueller, B., Arts, M. G. I., Barnes, W., Carstensen, M., Scholten, Y. J. H., El-Khaled, Y. C., Wild, C., Wegley Kelly, L., Nelson, C. E., Sandin, S. A., Vermeij, M. J. A., Rohwer, F. L., Picioreanu, C., Stocchi, P., & Haas, A. F. (2023). Small-scale oxygen distribution patterns in a coral reef. Frontiers in Marine Science, 10, 1135686.
Silveira, C. B., Luque, A., Haas, A. F., Roach, T. N. F., George, E. E., Knowles, B., Little, M., Sullivan, C. J., Varona, N. S., Wegley Kelly, L., Brainard, R., Rohwer, F., & Bailey, B. (2023). Viral predation pressure on coral reefs. BMC Biology, 21(1), 77.
Nelson, C. E., Wegley Kelly, L., & Haas, A. F. (2023). Microbial Interactions with Dissolved Organic Matter Are Central to Coral Reef Ecosystem Function and Resilience. Annual Review of Marine Science, 15(1), 431–460.
Quinlan, Z. A., Koester, I., Aron, A. T., Petras, D., Aluwihare, L. I., Dorrestein, P. C., Nelson, C. E., & Wegley Kelly, L. (2022). ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and In Silico Metabolite Structure Prediction. Metabolites, 12(12), 1275.
Levenstein, M. A., Gysbers, D. J., Marhaver, K. L., Kattom, S., Tichy, L., Quinlan, Z., Tholen, H. M., Wegley Kelly, L., Vermeij, M. J. A., Wagoner Johnson, A. J., & Juarez, G. (2022). Millimeter-scale topography facilitates coral larval settlement in wave-driven oscillatory flow. PLOS ONE, 17(9), e0274088.
Levenstein, M. A., Marhaver, K. L., Quinlan, Z. A., Tholen, H. M., Tichy, L., Yus, J., Lightcap, I., Kelly, L. W., Juarez, G., Vermeij, M. J. A., & Johnson, A. J. W. (2022). Composite substrates reveal inorganic material cues for coral larval settlement. Acs Sustainable Chemistry & Engineering, 10(12), 3960–3971.
Remple, K. L., Silbiger, N. J., Quinlan, Z. A., Fox, M. D., Kelly, L. W., Donahue, M. J., & Nelson, C. E. (2021). Coral reef biofilm bacterial diversity and successional trajectories are structured by reef benthic organisms and shift under chronic nutrient enrichment. Npj Biofilms and Microbiomes, 7(1), 11.
Kelly, L. W., Nelson, C. E., Aluwihare, L. I., Arts, M. G. I., Dorrestein, P. C., Koester, I., Matsuda, S. B., Petras, D., Quinlan, Z. A., & Haas, A. F. (2021). Molecular commerce on coral reefs: Using metabolomics to reveal biochemical exchanges underlying holobiont biology and the ecology of coastal ecosystems. Frontiers in Marine Science, 8, 11.
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Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., Edwards, R. A., Fox, M. D., Hatay, M., Johnson, M. D., Kelly, E. L. A., Lim, Y. W., Macherla, S., Quinlan, Z. A., Silva, G. G. Z., Vermeij, M. J. A., Zgliczynski, B., Sandin, S. A., Smith, J. E., & Rohwer, F. (2019). Diel population and functional synchrony of microbial communities on coral reefs. Nature Communications, 10.
James, A. K., Kelly, L. W., Nelson, C. E., Wilbanks, E. G., & Carlson, C. A. (2019). Elevated pCO(2) alters marine heterotrophic bacterial community composition and metabolic potential in response to a pulse of phytoplankton organic matter. Environmental Microbiology, 21(2), 541–556.
Quinlan, Z. A., Remple, K., Fox, M. D., Silbiger, N. J., Oliver, T. A., Putnam, H. M., Kelly, L. W., Carlson, C. A., Donahue, M. J., & Nelson, C. E. (2018). Fluorescent organic exudates of corals and algae in tropical reefs are compositionally distinct and increase with nutrient enrichment. Limnology and Oceanography Letters, 3(4), 331–340.
Nakajima, R., Haas, A. F., Silveira, C. B., Kelly, E. L. A., Smith, J. E., Sandin, S., Kelly, L. W., Rohwer, F., Nakatomi, N., & Kurihara, H. (2018). Release of dissolved and particulate organic matter by the soft coral Lobophytum and subsequent microbial degradation. Journal of Experimental Marine Biology and Ecology, 504, 53–60.
Linda Wegley Kelly, Andreas F. Haas, & Craig E. Nelson. (2018). Ecosystem microbiology of coral reefs: Linking genomic, metabolomic, and biogeochemical Dynamics from animal symbioses to reefscape processes. MSystems, 3(2), e00162-17.
Petras, D., Koester, I., Da Silva, R., Stephens, B. M., Haas, A. F., Nelson, C. E., Kelly, L. W., Aluwihare, L. I., & Dorrestein, P. C. (2017). High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter. Frontiers in Marine Science, 4(405).
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Haas, A. F., Knowles, B., Lim, Y. W., McDole Somera, T., Kelly, L. W., Hatay, M., & Rohwer, F. (2014). Unraveling the unseen players in the ocean - a field guide to water chemistry and marine microbiology. J Vis Exp, 93, e52131.
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Haas, A. F., Nelson, C. E., Wegley Kelly, L., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., & Smith, J. E. (2011). Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity. PLOS ONE, 6(11), e27973.
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Vega Thurber, R., Willner-Hall, D., Rodriguez-Mueller, B., Desnues, C., Edwards, R. A., Angly, F., Dinsdale, E., Kelly, L., & Rohwer, F. (2009). Metagenomic analysis of stressed coral holobionts. Environmental Microbiology, 11(8), 2148–2163.
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Beman, J. M., Roberts, K. J., Wegley, L., Rohwer, F., & Francis, C. A. (2007). Distribution and diversity of archaeal ammonia monooxygenase genes associated with corals. Applied and Environmental Microbiology, 73(17), 5642–5647.
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